stacks

Software pipeline for building loci from short-read sequences

Name

stacks

Programs

• clone_filter
• cstacks
• denovo_map.pl
• gstacks
• kmer_filter
• phasedstacks
• populations
• process_radtags
• process_shortreads
• ref_map.pl
• sstacks
• stacks-count-reads-per-sample-per-locus
• stacks-dist-extract
• stacks-gdb
• stacks-hist2d-loci-samples-coverage
• stacks-integrate-alignments
• stacks-private-alleles
• stacks-samtools-tview
• tsv2bam
• ustacks

Homepage

• http://catchenlab.life.illinois.edu/stacks/

Version

2.68

License

• GNU General Public License v3.0 or later

Maintainers

• Bruno Bzeznik

Platforms

• aarch64-linux
• armv5tel-linux
• armv6l-linux
• armv7a-linux
• armv7l-linux
• i686-linux
• loongarch64-linux
• m68k-linux
• microblaze-linux
• microblazeel-linux
• mips-linux
• mips64-linux
• mips64el-linux
• mipsel-linux
• powerpc-linux
• powerpc64-linux
• powerpc64le-linux
• riscv32-linux
• riscv64-linux
• s390-linux
• s390x-linux
• x86_64-linux

Defined

Source