seaview
SeaView is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny.
- SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
- SeaView drives programs muscle or Clustal Omega for multiple sequence alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files.
- Seaview drives the Gblocks program to select blocks of evolutionarily conserved sites.
- SeaView computes phylogenetic trees by
- parsimony, using PHYLIP's dnapars/protpars algorithm,
- distance, with NJ or BioNJ algorithms on a variety of evolutionary distances,
- maximum likelihood, driving program PhyML 3.1.
- Seaview can use the Transfer Bootstrap Expectation method to compute the bootstrap support of PhyML and distance trees.
- SeaView prints and draws phylogenetic trees on screen, SVG, PDF or PostScript files.
- SeaView allows to download sequences from EMBL/GenBank/UniProt using the Internet.
Seaview is published in:
Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27(2):221-224.
- Name
- seaview
- Main Program
seaview- Programs
seaview
- Homepage
- Version
- 5.1
- License
- Maintainers
- Platforms
- aarch64-linux
- armv5tel-linux
- armv6l-linux
- armv7a-linux
- armv7l-linux
- i686-linux
- loongarch64-linux
- m68k-linux
- microblaze-linux
- microblazeel-linux
- mips-linux
- mips64-linux
- mips64el-linux
- mipsel-linux
- powerpc-linux
- powerpc64-linux
- powerpc64le-linux
- riscv32-linux
- riscv64-linux
- s390-linux
- s390x-linux
- x86_64-linux
- Defined
- Source