python314Packages.bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

Name
bx-python
Programs
  • aggregate_scores_in_intervals.py
  • align_print_template.py
  • axt_extract_ranges.py
  • axt_to_fasta.py
  • axt_to_lav.py
  • axt_to_maf.py
  • bed_bigwig_profile.py
  • bed_build_windows.py
  • bed_complement.py
  • bed_count_by_interval.py
  • bed_count_overlapping.py
  • bed_coverage.py
  • bed_coverage_by_interval.py
  • bed_diff_basewise_summary.py
  • bed_extend_to.py
  • bed_intersect.py
  • bed_intersect_basewise.py
  • bed_merge_overlapping.py
  • bed_rand_intersect.py
  • bed_subtract_basewise.py
  • bnMapper.py
  • div_snp_table_chr.py
  • find_in_sorted_file.py
  • gene_fourfold_sites.py
  • get_scores_in_intervals.py
  • int_seqs_to_char_strings.py
  • interval_count_intersections.py
  • interval_join.py
  • lav_to_axt.py
  • lav_to_maf.py
  • line_select.py
  • lzop_build_offset_table.py
  • mMK_bitset.py
  • maf_build_index.py
  • maf_chop.py
  • maf_chunk.py
  • maf_col_counts.py
  • maf_col_counts_all.py
  • maf_count.py
  • maf_covered_ranges.py
  • maf_covered_regions.py
  • maf_div_sites.py
  • maf_drop_overlapping.py
  • maf_extract_chrom_ranges.py
  • maf_extract_ranges.py
  • maf_extract_ranges_indexed.py
  • maf_filter.py
  • maf_filter_max_wc.py
  • maf_gap_frequency.py
  • maf_gc_content.py
  • maf_interval_alignibility.py
  • maf_limit_to_species.py
  • maf_mapping_word_frequency.py
  • maf_mask_cpg.py
  • maf_mean_length_ungapped_piece.py
  • maf_percent_columns_matching.py
  • maf_percent_identity.py
  • maf_print_chroms.py
  • maf_print_scores.py
  • maf_randomize.py
  • maf_region_coverage_by_src.py
  • maf_select.py
  • maf_shuffle_columns.py
  • maf_species_in_all_files.py
  • maf_split_by_src.py
  • maf_thread_for_species.py
  • maf_tile.py
  • maf_tile_2.py
  • maf_tile_2bit.py
  • maf_to_axt.py
  • maf_to_concat_fasta.py
  • maf_to_fasta.py
  • maf_to_int_seqs.py
  • maf_translate_chars.py
  • maf_truncate.py
  • maf_word_frequency.py
  • mask_quality.py
  • nib_chrom_intervals_to_fasta.py
  • nib_intervals_to_fasta.py
  • nib_length.py
  • one_field_per_line.py
  • out_to_chain.py
  • prefix_lines.py
  • pretty_table.py
  • qv_to_bqv.py
  • random_lines.py
  • table_add_column.py
  • table_filter.py
  • tfloc_summary.py
  • ucsc_gene_table_to_intervals.py
  • wiggle_to_array_tree.py
  • wiggle_to_binned_array.py
  • wiggle_to_chr_binned_array.py
  • wiggle_to_simple.py
Homepage
Version
0.14.0
License
Maintainers
Platforms
  • x86_64-linux
Defined
Source