fastqc
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are
- Import of data from BAM, SAM or FastQ files (any variant)
- Providing a quick overview to tell you in which areas there may be problems
- Summary graphs and tables to quickly assess your data
- Export of results to an HTML based permanent report
- Offline operation to allow automated generation of reports without running the interactive application
- Name
- fastqc
- Main Program
fastqc- Programs
fastqc
- Homepage
- Version
- 0.12.1
- License
- Maintainers
- Platforms
- i686-cygwin
- x86_64-cygwin
- x86_64-darwin
- aarch64-darwin
- i686-freebsd
- x86_64-freebsd
- aarch64-freebsd
- x86_64-solaris
- aarch64-linux
- armv5tel-linux
- armv6l-linux
- armv7a-linux
- armv7l-linux
- i686-linux
- loongarch64-linux
- m68k-linux
- microblaze-linux
- microblazeel-linux
- mips-linux
- mips64-linux
- mips64el-linux
- mipsel-linux
- powerpc-linux
- powerpc64-linux
- powerpc64le-linux
- riscv32-linux
- riscv64-linux
- s390-linux
- s390x-linux
- x86_64-linux
- aarch64-netbsd
- armv6l-netbsd
- armv7a-netbsd
- armv7l-netbsd
- i686-netbsd
- m68k-netbsd
- mipsel-netbsd
- powerpc-netbsd
- riscv32-netbsd
- riscv64-netbsd
- x86_64-netbsd
- i686-openbsd
- x86_64-openbsd
- x86_64-redox
- Defined
- Source