bedtools

Powerful toolset for genome arithmetic

Name
bedtools
Programs
  • annotateBed
  • bamToBed
  • bamToFastq
  • bed12ToBed6
  • bedToBam
  • bedToIgv
  • bedpeToBam
  • bedtools
  • closestBed
  • clusterBed
  • complementBed
  • coverageBed
  • expandCols
  • fastaFromBed
  • flankBed
  • genomeCoverageBed
  • getOverlap
  • groupBy
  • intersectBed
  • linksBed
  • mapBed
  • maskFastaFromBed
  • mergeBed
  • multiBamCov
  • multiIntersectBed
  • nucBed
  • pairToBed
  • pairToPair
  • randomBed
  • shiftBed
  • shuffleBed
  • slopBed
  • sortBed
  • subtractBed
  • tagBam
  • unionBedGraphs
  • windowBed
  • windowMaker
Homepage
Version
2.31.1
License
Maintainers
Platforms
  • i686-cygwin
  • x86_64-cygwin
  • x86_64-darwin
  • aarch64-darwin
  • i686-freebsd
  • x86_64-freebsd
  • aarch64-freebsd
  • x86_64-solaris
  • aarch64-linux
  • armv5tel-linux
  • armv6l-linux
  • armv7a-linux
  • armv7l-linux
  • i686-linux
  • loongarch64-linux
  • m68k-linux
  • microblaze-linux
  • microblazeel-linux
  • mips-linux
  • mips64-linux
  • mips64el-linux
  • mipsel-linux
  • powerpc-linux
  • powerpc64-linux
  • powerpc64le-linux
  • riscv32-linux
  • riscv64-linux
  • s390-linux
  • s390x-linux
  • x86_64-linux
  • aarch64-netbsd
  • armv6l-netbsd
  • armv7a-netbsd
  • armv7l-netbsd
  • i686-netbsd
  • m68k-netbsd
  • mipsel-netbsd
  • powerpc-netbsd
  • riscv32-netbsd
  • riscv64-netbsd
  • x86_64-netbsd
  • i686-openbsd
  • x86_64-openbsd
  • x86_64-redox
Defined
Source