bedops

Suite of tools for addressing questions arising in genomics studies

Name

bedops

Programs

• bam2bed
• bam2bed_gnuParallel
• bam2bed_sge
• bam2bed_slurm
• bam2starch
• bam2starch_gnuParallel
• bam2starch_sge
• bam2starch_slurm
• bedextract-typical
• bedmap-typical
• bedops-typical
• closest-features-typical
• convert2bed
• gff2bed
• gff2starch
• gtf2bed
• gtf2starch
• gvf2bed
• gvf2starch
• psl2bed
• psl2starch
• rmsk2bed
• rmsk2starch
• sam2bed
• sam2starch
• sort-bed-typical
• starch-diff-typical
• starch-typical
• starchcat-typical
• starchcluster_gnuParallel-typical
• starchcluster_sge-typical
• starchcluster_slurm-typical
• starchstrip-typical
• unstarch-typical
• update-sort-bed-migrate-candidates-typical
• update-sort-bed-slurm-typical
• update-sort-bed-starch-slurm-typical
• vcf2bed
• vcf2starch
• wig2bed
• wig2starch

Homepage

• https://github.com/bedops/bedops

Version

2.4.42

License

• GNU General Public License v2.0 only

Maintainers

• Justin Bedő

Platforms

• x86_64-cygwin
• x86_64-darwin
• x86_64-freebsd
• x86_64-genode
• x86_64-solaris
• x86_64-linux
• x86_64-netbsd
• x86_64-none
• x86_64-openbsd
• x86_64-redox
• x86_64-windows

Defined

Source